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Projects

Epoch

Project Description

We are building an ontology-based architecture to support the management of clinical trials. At the core of our architecture is a suite of ontologies that we call Epoch that encodes knowledge about the clinical trial domain that is relevant to trial management applications. The ontologies define the vocabulary and semantics necessary for formal representation of clinical trials.

The Epoch framework has software components that facilitate the sharing of the ontological formalisms among heterogeneous applications, thus promoting semantic interoperability among these applications. We are tailoring our approach to meet the requirements in the management of clinical trials at the Immune Tolerance Network (ITN), which develops new therapeutics for immune-mediated disorders. Our work is borne out of the collaborative research efforts with ITN in addressing the informatics needs of collecting, managing, integrating and analyzing clinical trial and immunoassay data.

Related People

Amar K. Das, M.D., Ph.D.
Assistant Professor of Medicine (Biomedical Informatics) and of Psychiatry & Behavioral Science

Related Publications Only the 5 most recent displayed

SMI-2008-1305
Semantic Integration of Software Systems in Translational Clinical Trials
R. D. Shankar, M. J. O'Connor, D. B. Parrish, A. K. Das
AAAI Sping Symposium, Stanford, CA. Published 2008
SMI-2008-1304
An Ontological Approach to Representing and Reasoning with Temporal Constraints in Clinical Trial Protocols
R. D. Shankar, S. B. Martins, M. J. O'Connor, A. K. Das
HEALTHINF 2008 - International Conference on Health Informatics, Madeira, Portugal. Published 2008
SMI-2007-1245
Using Semantic Web Technologies for Knowledge-Driven Querying of Biomedical Data
M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, D. B. Parrish, A. K. Das, M. A. Musen
11th Conference on Artificial Intelligence in Medicine (AIME2007), Amsterdam, Netherlands, Springer, LNAI 4594, 267-276. Published 2007
SMI-2007-1237
An Ontology-based Architecture for Integration of Clinical Trials Management Applications
R. D. Shankar, S. B. Martins, M. J. O'Connor, D. B. Parrish, A. K. Das
AMIA Annual Symposium, Chicago, IL. Published 2007
SMI-2007-1235
An Ontological Approach to Temporal Constraint Reasoning in the Management of Clinical Trials
R. D. Shankar, S. B. Martins, M. J. O'Connor, D. B. Parrish, A. K. Das
. Published 2007

Related Events

Colloquium
Encoding Clinical Trials with TrialWiz
Date:
Unknown, Apr 30 0208
Time:
12:15-1:15pm
Location:
MSOB X275
Speaker:
Ravi Shankar
Project:
Epoch
Affiliation:
BMIR

Stanford School of Medicine