charts

Projects

Genomic Nosology for Medicine (GNOMED)

Project Description

In the mid 1700s, Carl Linnaeus devised the binomial nomenclature to classify living things into a hierarchy, or taxonomy. Our modern day use of DNA sequencing has enabled the reorganization of the position of species within established taxonomical trees by providing a quantitative distance measure between species. Linnaeus was also a co-founder of systematic nosology, or the classification of disease. We hypothesize that genomic data, medical knowledge, and structured vocabularies have advanced to the point that we can begin to modernize the classification of disease, similar to how DNA sequencing has modernized taxonomy.

Related People

Atul J. Butte, M.D., Ph.D.
Assistant Professor of Medicine (Biomedical Informatics) and Pediatrics
Rong Chen, Ph.D.
Staff Bioinformatics Programmer
Annie P. Chiang, Ph.D.
Postdoctoral Research Fellow
Joel Dudley
Staff Bioinformatics Programmer
Shivkumar Venkatasubrahmanyam, Ph.D.
Postdoctoral Research Fellow

Related Publications Only the 5 most recent displayed

SMI-2008-1303
The Ultimate Model Organism
A. J. Butte
Science, 320, 5874, 325-327. Published 2008
SMI-2008-1293
Novel Integration of Hopsital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation
D. P. Chen, S. C. Weber, P. S. Constantinou, T. A. Ferris, H. J. Lowe, A. J. Butte
Pacific Symposium on Biocomputing, Big Island, Hawaii, 13, 243-254. Published 2008
SMI-2008-1292
Enabling Integrative Genomic Analysis of High-Impact Human Diseases through Text Mining
J. Dudley, A. J. Butte
Pacific Symposium on Biocomputing, Big Island, Hawaii, 13, 580-591. Published 2008
SMI-2007-1297
Methodologies for Extracting Functional Pharmacogenomic Experiments from International Repository
Y. Lin, A. P. Chiang, P. Yao, R. Chen, A. J. Butte, R. S. Lin
AMIA Annual Symposium, Chicago, IL, 463-467. Published 2007
SMI-2007-1296
Clinical Arrays of Laboratory Measures, or “Clinarrays”, Built from an Electronic Health Record Enable Disease Subtyping by Severity
D. P. Chen, S. C. Weber, P. S. Constantinou, T. A. Ferris, H. J. Lowe, A. J. Butte
AMIA Annual Symposium, Chicago, IL, 115-119. Published 2007

Related Events

BMIR Faculty External Invited Seminar
Atul Butte speaking at the Van Andel Research Institute
Date:
Wed, Oct 3 2007
Location:
Van Andel Research Institute, Grand Rapids, Michigan
Speaker:
Atul Butte
Project:
Genomic Nosology for Medicine (GNOMED)
Affiliation:
Stanford University

Stanford School of Medicine