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Projects

Genomic Nosology for Medicine (GNOMED)

Project Description

In the mid 1700s, Carl Linnaeus devised the binomial nomenclature to classify living things into a hierarchy, or taxonomy. Our modern day use of DNA sequencing has enabled the reorganization of the position of species within established taxonomical trees by providing a quantitative distance measure between species. Linnaeus was also a co-founder of systematic nosology, or the classification of disease. We hypothesize that genomic data, medical knowledge, and structured vocabularies have advanced to the point that we can begin to modernize the classification of disease, similar to how DNA sequencing has modernized taxonomy.

Related People

Atul J. Butte, M.D., Ph.D.
Assistant Professor of Medicine (Biomedical Informatics) and Pediatrics
Rong Chen, Ph.D.
Staff Bioinformatics Programmer
Annie P. Chiang, Ph.D.
Postdoctoral Research Fellow
Joel Dudley
Staff Bioinformatics Programmer
Shivkumar Venkatasubrahmanyam, Ph.D.
Postdoctoral Research Fellow

Related Publications Only the 5 most recent displayed

View All Publications

BMIR-2009-1362
Identifying compartment-specific non-HLA targets after renal transplantation by integrating transcriptome and ‘‘antibodyome’’ measures
L. Li, P. Wadia, M. Sarwal, N. Kambham, T. Sigdel, D. B. Miklos, R. Chen, M. Naesens, A. J. Butte
PNAS, 106, 11, 4148-4153. Published in 2009
BMIR-2008-1338
Using SNOMED-CT For Translational Genomics Data Integration
J. Dudley, D. P. Chen, A. J. Butte
Ronald Cornet, Kent Spackman (eds.): Representing and sharing knowledge using SNOMED. Proceedings of the 3rd International Conference on Knowledge Rep, Pheonix (AZ), USA, CEUR Workshop Proceedings, ISSN 1613-0073, online CEUR-WS.org/Vol-410/, 91-96. Published in 2008
BMIR-2008-1303
The Ultimate Model Organism
A. J. Butte
Science, 320, 5874, 325-327. Published in 2008
BMIR-2008-1293
Novel Integration of Hopsital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation
D. P. Chen, S. C. Weber, P. S. Constantinou, T. A. Ferris, H. J. Lowe, A. J. Butte
Pacific Symposium on Biocomputing, Big Island, Hawaii, 13, 243-254. Published in 2008
BMIR-2008-1292
Enabling Integrative Genomic Analysis of High-Impact Human Diseases through Text Mining
J. Dudley, A. J. Butte
Pacific Symposium on Biocomputing, Big Island, Hawaii, 13, 580-591. Published in 2008

Related Events

BMIR Faculty External Invited Seminar
Atul Butte speaking at the Van Andel Research Institute
Date:
Wed, Oct 3 2007
Location:
Van Andel Research Institute, Grand Rapids, Michigan
Speaker:
Atul Butte
Project:
Genomic Nosology for Medicine (GNOMED)
Affiliation:
Stanford University

Stanford School of Medicine