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Publications
Featured Publications
 - SMI-2008-1303
- The Ultimate Model Organism
- A. J. Butte
- Science, 320, 5874, 325-327. Published 2008
- SMI-2008-1298
- BioPortal: A Web Portal to Biomedical Ontologies
- D. L. Rubin, D. de Abreu Moreira, P. P. Kanjamala, M. A. Musen
- AAAI Spring Symposium Series, Symbiotic Relationships between Semantic Web and Knowledge Engineering, Stanford University, (in press). Published 2008
 - SMI-2007-1295
- AILUN: reannotating gene expression data automatically
- R. Chen, L. Li, A. J. Butte
- Nature Methods, 4, 11, 879. Published 2007
 - SMI-2007-1281
- Evaluation and Integration of 49 Genome-wide Experiments and the Prediction of Previously Unknown Obesity-related Genes
- S. B. English, A. J. Butte
- Bioinformatics, Epub. Published 2007
- SMI-2007-1261
- Protege: A Tool for Managing and Using Terminology in Radiology Applications
- D. L. Rubin, N. F. Noy, M. A. Musen
- Journal of Digital Imaging, J Digit Imaging. Published 2007
 - SMI-2007-1244
- Efficiently Querying Relational Databases using OWL and SWRL
- M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, A. K. Das, M. A. Musen
- The First International Conference on Web Reasoning and Rule Systems, Innsbruck, Austria, Springer, LNCS 4524, 361-363. Published 2007
- SMI-2007-1235
- An Ontological Approach to Temporal Constraint Reasoning in the Management of Clinical Trials
- R. D. Shankar, S. B. Martins, M. J. O'Connor, D. B. Parrish, A. K. Das
- . Published 2007
 - SMI-2006-1090
- Creation and implications of a phenome-genome network
- A. J. Butte, I. S. Kohane
- Nature Biotechnology, 24, 1, 55 - 62. Published 2006
 - SMI-2005-1029
- Prediction of preadipocyte differentiation by gene expression reveals role of insulin receptor substrates and necdin
- Y. Tseng, A. J. Butte, E. Kokkotou, V. K. Yechoor, C. M. Taniguchi, K. M. Kriauciunas, A. M. Cypess, M. Niinobe, K. Yoshikawa, M. E. Patti, C. Kahn
- Nature Cell Biology, 7, 6, 601-614. Published 2005
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