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Publications

The work of BMIR researchers is published in peer-reviewed medical journals as well as in books, working papers, evidence reports and other formats. A selection of recently published work is listed below. Click on the labels at right to view publications by type.

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Featured Publications

SMI-2008-1303
The Ultimate Model Organism
A. J. Butte
Science, 320, 5874, 325-327. Published 2008
SMI-2008-1298
BioPortal: A Web Portal to Biomedical Ontologies
D. L. Rubin, D. de Abreu Moreira, P. P. Kanjamala, M. A. Musen
AAAI Spring Symposium Series, Symbiotic Relationships between Semantic Web and Knowledge Engineering, Stanford University, (in press). Published 2008
SMI-2007-1295
AILUN: reannotating gene expression data automatically
R. Chen, L. Li, A. J. Butte
Nature Methods, 4, 11, 879. Published 2007
SMI-2007-1281
Evaluation and Integration of 49 Genome-wide Experiments and the Prediction of Previously Unknown Obesity-related Genes
S. B. English, A. J. Butte
Bioinformatics, Epub. Published 2007
SMI-2007-1261
Protege: A Tool for Managing and Using Terminology in Radiology Applications
D. L. Rubin, N. F. Noy, M. A. Musen
Journal of Digital Imaging, J Digit Imaging. Published 2007
SMI-2007-1244
Efficiently Querying Relational Databases using OWL and SWRL
M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, A. K. Das, M. A. Musen
The First International Conference on Web Reasoning and Rule Systems, Innsbruck, Austria, Springer, LNCS 4524, 361-363. Published 2007
SMI-2007-1235
An Ontological Approach to Temporal Constraint Reasoning in the Management of Clinical Trials
R. D. Shankar, S. B. Martins, M. J. O'Connor, D. B. Parrish, A. K. Das
. Published 2007
SMI-2006-1090
Creation and implications of a phenome-genome network
A. J. Butte, I. S. Kohane
Nature Biotechnology, 24, 1, 55 - 62. Published 2006
SMI-2005-1029
Prediction of preadipocyte differentiation by gene expression reveals role of insulin receptor substrates and necdin
Y. Tseng, A. J. Butte, E. Kokkotou, V. K. Yechoor, C. M. Taniguchi, K. M. Kriauciunas, A. M. Cypess, M. Niinobe, K. Yoshikawa, M. E. Patti, C. Kahn
Nature Cell Biology, 7, 6, 601-614. Published 2005

 

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