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Publications
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Publications by Martin J. O'Connor, M.Sc.
There are 55 publications that list Martin J. O'Connor as an author.
- BMIR-2010-1397
- A Lightweight Model for Representing and Reasoning with Temporal Information in Biomedical Ontologies
- M. J. O'Connor, A. K. Das
- International Conference on Health Informatics (HEALTHINF), Valencia, Spain. In Press in 2010
- BMIR-2009-1395
- SQWRL: a Query Language for OWL
- M. J. O'Connor, A. K. Das
- OWL: Experiences and Directions (OWLED), Fifth International Workshop, Chantilly, VA. Published in 2009
- BMIR-2009-1394
- A Rule Management and Elicitation Tool for SWRL Rule Bases
- S. Hassanpour, M. J. O'Connor, A. K. Das
- 3rd International Rule Challenge at RuleML 2009, Las Vegas, NV. Published in 2009
- BMIR-2009-1393
- Axiomé: a Tool for the Elicitation and Management of SWRL Rules
- S. Hassanpour, M. J. O'Connor, A. K. Das
- OWL: Experiences and Directions (OWLED), Fifth International Workshop, Chantilly, VA. Published in 2009
- BMIR-2009-1392
- Exploration of SWRL Rule Bases through Visualization, Paraphrasing, and Categorization of Rules
- S. Hassanpour, M. J. O'Connor, A. K. Das
- International RuleML Symposium on Rule Interchange and Applications, Las Vegas, NV, Springer-Verlag, LNCS 5858, 246–261. Published in 2009
 - BMIR-2009-1383
- A Bayesian Network Model for Analysis of Detection Performance in Surveillance Systems
- M. Izadi, D. Buckeridge, A. Okhmatovskaia, S. W. Tu, M. J. O'Connor, C. I. Nyulas, M. A. Musen
- AMIA Annual Symposium, San Francisco, CA. Published in 2009
 - BMIR-2009-1380
- Semantic Reasoning with Image Annotations for Tumor Assessment
- M. Levy, M. J. O'Connor, D. L. Rubin
- AMIA Annual Symposium, San Francisco, CA. Published in 2009
 - BMIR-2009-1379
- Using the Semantic Web Rule Language in the Development of Ontology-Driven Applications
- M. J. O'Connor, M. A. Musen, A. K. Das
- Handbook of Research on Emerging Rule-Based Languages and Technologies: Open Solutions and Approaches, Adrian Giurca, Dragan Gasevic, and Kuldar Taveter, IGI Global, Hershey, Pennsylvania, U.S.A, 525-539. Published in 2009
 - BMIR-2009-1358
- Software-Engineering Challenges of Building and Deploying Reusable Problem Solvers
- M. J. O'Connor, C. I. Nyulas, A. Okhmatovskaia, D. Buckeridge, S. W. Tu, M. A. Musen
- Artificial Intelligence for Engineering Design, Analysis and Manufacturing, 24, 3. Published in 2009
 - BMIR-2009-1333
- Representing and Reasoning with Temporal Constraints in Clinical Trials using Semantic Technologies
- R. D. Shankar, S. B. Martins, M. J. O'Connor, D. B. Parrish, A. K. Das
- Biomedical Engineering Systems and Technologies, Communications in Computer and Information Science, Springer, 25. Published in 2009
 - BMIR-2009-1318
- Knowledge-Data Integration for Temporal Reasoning in a Clinical Trial System
- M. J. O'Connor, R. D. Shankar, D. B. Parrish, A. K. Das
- International Journal of Medical Informatics, 78, Suppl. 1, S77-S85. Published in 2009
 - BMIR-2008-1336
- The SWRLAPI: A Development Environment for Working with SWRL Rules
- M. J. O'Connor, C. I. Nyulas, R. D. Shankar, A. K. Das, M. A. Musen
- OWL: Experiences and Directions (OWLED), Fifth International Workshop, held with 7th International Semantic Web Conference, Karlsruhe, Germany. Published in 2008
 - BMIR-2008-1329
- An Ontology-Driven Framework for Deploying JADE Agent Systems
- C. I. Nyulas, M. J. O'Connor, S. W. Tu, A. Okhmatovskaia, D. Buckeridge, M. A. Musen
- IEEE/WIC/ACM International Conference on Intelligent Agent Technology, Sydney, Australia, 2, 573-577. Published in 2008
 - BMIR-2008-1322
- Understanding Detection Performance in Public Health Surveillance: Modeling Aberrancy-Detection Algorithms
- D. Buckeridge, A. Okhmatovskaia, S. W. Tu, M. J. O'Connor, C. I. Nyulas, M. A. Musen
- Journal of the American Medical Informatics Association, 15, 6, 760-769. Published in 2008
 - BMIR-2008-1321
- Predicting Outbreak Detection in Public Health Surveillance: Quantitative Analysis to Enable Evidence-Based Method Selection
- D. Buckeridge, A. Okhmatovskaia, S. W. Tu, M. J. O'Connor, C. I. Nyulas, M. A. Musen
- AMIA Annual Symposium, Washington, DC. Published in 2008
 - BMIR-2008-1305
- Semantic Integration of Software Systems in Translational Clinical Trials
- R. D. Shankar, M. J. O'Connor, D. B. Parrish, A. K. Das
- AAAI Sping Symposium, Stanford, CA. Published in 2008
 - BMIR-2008-1304
- An Ontological Approach to Representing and Reasoning with Temporal Constraints in Clinical Trial Protocols
- R. D. Shankar, S. B. Martins, M. J. O'Connor, A. K. Das
- HEALTHINF 2008 - International Conference on Health Informatics, Madeira, Portugal. Published in 2008
 - BMIR-2008-1302
- Using an Integrated Ontology and Information Model for Querying and Reasoning about Phenotypes: The Case of Autism
- S. W. Tu, M. J. O'Connor, R. D. Shankar, A. K. Das
- AMIA Annual Symposium, Washington DC. Published in 2008
 - BMIR-2008-1287
- Developing a Web-Based Application using OWL and SWRL
- M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, A. K. Das
- AAAI Spring Symposium, Stanford, CA, USA. Published in 2008
 - BMIR-2007-1337
- SPOT – Utilizing Temporal Data for Data Mining in Medicine
- G. Tusch, M. J. O'Connor, R. D. Shankar, T. Redmond, A. K. Das
- Intelligent Data Analysis in Biomedicine and Pharmacology Workshop (IDAMAP), held with 11th Conference on Artificial Intelligence in Medicine. Published in 2007
 - BMIR-2007-1328
- Reusable Semantic Web-based Methods to Query Temporal Patterns: Application to Clinical Trials Management
- M. J. O'Connor, R. D. Shankar, A. K. Das
- Intelligent Data Analysis in Biomedicine and Pharmacology Workshop (IDAMAP), held with 11th Conference on Artificial Intelligence in Medicine. Published in 2007
 - BMIR-2007-1327
- BioSTORM: High-Throughput Evaluation of Outbreak Detection Methods
- D. Buckeridge, M. J. O'Connor, S. W. Tu, C. I. Nyulas, M. A. Musen
- Fifth Public Health Information Network Conference (PHIN). Atlanta, GA.. Published in 2007
 - BMIR-2007-1326
- BioSTORM: A Test Bed for Configuring and Evaluating Biosurveillance Methods.
- S. W. Tu, M. J. O'Connor, D. Buckeridge, A. Okhmatovskaia, C. I. Nyulas, M. A. Musen
- AMIA Annual Symposium Proceedings. Published in 2007
 - BMIR-2007-1251
- Querying the Semantic Web with SWRL
- M. J. O'Connor, S. W. Tu, C. I. Nyulas, A. K. Das, M. A. Musen
- The International RuleML Symposium on Rule Interchange and Applications (RuleML2007), Orlando, FL, Springer Verlag. Published in 2007
 - BMIR-2007-1250
- An Ontology-Driven Method for Hierarchical Mining of Temporal Patterns: Application to HIV Drug Resistance Research
- R. Raj, M. J. O'Connor, A. K. Das
- AMIA Annual Symposium, Chicago, IL. Published in 2007
 - BMIR-2007-1245
- Using Semantic Web Technologies for Knowledge-Driven Querying of Biomedical Data
- M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, D. B. Parrish, A. K. Das, M. A. Musen
- 11th Conference on Artificial Intelligence in Medicine (AIME2007), Amsterdam, Netherlands, Springer, LNAI 4594, 267-276. Published in 2007
 - BMIR-2007-1244
- Efficiently Querying Relational Databases using OWL and SWRL
- M. J. O'Connor, R. D. Shankar, S. W. Tu, C. I. Nyulas, A. K. Das, M. A. Musen
- The First International Conference on Web Reasoning and Rule Systems, Innsbruck, Austria, Springer, LNCS 4524, 361-363. Published in 2007
 - BMIR-2007-1237
- An Ontology-based Architecture for Integration of Clinical Trials Management Applications
- R. D. Shankar, S. B. Martins, M. J. O'Connor, D. B. Parrish, A. K. Das
- AMIA Annual Symposium, Chicago, IL. Published in 2007
 - BMIR-2007-1236
- Knowledge-Level Querying of Temporal Patterns in Clinical Research Systems
- M. J. O'Connor, D. B. Parrish, R. D. Shankar, A. K. Das
- 12th World Congress on Medical Informatics (Medinfo2007), Brisbane, Australia. Published in 2007
- BMIR-2006-1384
- Ontology-Driven Mapping of Temporal Data in Biomedical Databases
- P. Narayanan, M. J. O'Connor, A. K. Das
- . Published in 2006
- BMIR-2006-1381
- A Dynamic Distributed Architecture for Temporal Data Abstraction
- V. P. Chauhan, M. J. O'Connor, M. Izadi, A. K. Das
- . Published in 2006
 - BMIR-2006-1227
- Epoch: an Ontological Framework to Support Clinical Trials Management
- R. D. Shankar, M. J. O'Connor, D. B. Parrish, S. B. Martins, A. K. Das
- International Workshop on Health Information and Knowledge Management (HIKM 2006), Arlington, VA, ACM Press. Published in 2006
 - BMIR-2006-1226
- Towards Semantic Interoperability in a Clinical Trials Management System
- R. D. Shankar, S. B. Martins, M. J. O'Connor, D. B. Parrish, A. K. Das
- The 5th International Semantic Web Conference (ISWC 2006), Athens, GA, Springer. Published in 2006
 - BMIR-2006-1104
- An Ontology-Driven Mediator for Querying Time-Oriented Biomedical Data
- M. J. O'Connor, R. D. Shankar, A. K. Das
- 19th IEEE International Symposium on Computer-Based Medical Systems, Salt Lake City, Utah. Published in 2006
 - BMIR-2006-1102
- A Knowledge-Based System for Managing Clinical Trials
- R. D. Shankar, S. B. Martins, M. J. O'Connor, D. B. Parrish, A. K. Das
- 19th IEEE International Symposium on Computer-Based Medical Systems, Salt Lake City, Utah. Published in 2006
 - BMIR-2005-1114
- Knowledge-Based Syndromic Surveillance for Bioterrorism
- M. A. Musen, M. Crubezy, M. J. O'Connor, D. Buckeridge
- 2005 AAAI Spring Symposium on AI Technologies for Homeland Security, Stanford, CA. Published in 2005
- BMIR-2005-1086
- A Knowledge-Based Mediator for Temporal Pattern Discovery in Biomedical Databases
- M. J. O'Connor, A. K. Das
- . Published in 2005
 - BMIR-2005-1081
- Computational Method for Temporal Pattern Discovery in Biomedical Genomic Databases
- M. I. Rafiq, M. J. O'Connor, A. K. Das
- IEEE Computational Systems Bioinformatics Conference (CSB2005), Stanford, CA, USA, 362-365. Published in 2005
 - BMIR-2005-1080
- Supporting Rule System Interoperability on the Semantic Web with SWRL
- M. J. O'Connor, H. Knublauch, S. W. Tu, B. Grossof, M. Dean, W. E. Grosso, M. A. Musen
- Fourth International Semantic Web Conference (ISWC2005), Galway, Ireland. Published in 2005
 - BMIR-2005-1072
- Ontology-Centered Syndromic Surveillance for Bioterrorism
- M. Crubezy, M. J. O'Connor, D. Buckeridge, Z. Pincus, M. A. Musen
- IEEE Intelligent Systems, 20, 5, 26-35. Published in 2005
 - BMIR-2004-1300
- A knowledge-based framework for deploying surveillance problem solvers
- D. Buckeridge, M. J. O'Connor, H. Xu, M. A. Musen
- International Conference on Information and Knowledge Engineering (IKE'04), Las Vegas, NV. Published in 2004
 - BMIR-2004-1031
- Translating research into practice: organizational issues in implementing automated decision support for hypertension in three medical centers
- M. K. Goldstein, R. W. Coleman, S. W. Tu, M. J. O'Connor, S. B. Martins, P. W. Lavori, M. G. Shilpak, E. Z. Oddone, A. Advani, P. Gholami, B. B. Hoffman, R. D. Shankar, M. A. Musen
- Journal of the American Medical Informatics Association, JAMIA, 11, 5, 368-376. Published in 2004
 - BMIR-2003-1194
- BioSTORM: A System for Automated Surveillance of Diverse Data Sources
- M. J. O'Connor, D. Buckeridge, M. K. Choy, M. Crubezy, Z. Pincus, M. A. Musen
- AMIA Annu Symp Proc, AMIA Annual Symposium, Washington, D.C.. Published in 2003
 - BMIR-2002-0946
- Knowledge-Based Bioterrorism Surveillance
- D. Buckeridge, J. Graham, M. J. O'Connor, M. K. Choy, S. W. Tu, M. A. Musen
- AMIA Annual Symposium, San Antonio, TX. Published in 2002
 - BMIR-2002-0941
- The Chronus II Temporal Database Mediator
- M. J. O'Connor, S. W. Tu, M. A. Musen
- AMIA Annual Symposium, San Antonio, TX. Published in 2002
 - BMIR-2001-1299
- A Knowledge-Based Approach To Temporal Abstraction Of Clinical Data For Disease Surveillance
- M. A. Musen, M. J. O'Connor, D. Buckeridge, J. Graham, N. F. Noy, Y. Shahar, K. A. Henry
- NATO Human Factors in Medicine Symposium on Operational Issues in Chemical and Biological Defense, Estoril, Portugal. Published in 2001
- BMIR-2001-0877
- A Client-Server Framework for Deploying a Decision-Support System in a Resource-Constrained Environment
- M. J. O'Connor, S. W. Tu, A. Advani, R. W. Coleman, M. K. Goldstein, R. D. Shankar, M. A. Musen
- . Published in 2001
 - BMIR-2001-0875
- Patient Safety in Guideline-Based Decision Support for Hypertension Management: ATHENA DSS
- M. K. Goldstein, B. B. Hoffman, R. W. Coleman, S. W. Tu, M. J. O'Connor, S. B. Martins, A. Advani, R. D. Shankar, M. A. Musen
- AMIA Annual Symposium, Washington, DC. Published in 2001
 - BMIR-2001-0858
- RASTA: A Distributed Temporal Abstraction System to facilitate Knowledge-Driven Monitoring of Clinical Databases
- M. J. O'Connor, W. E. Grosso, S. W. Tu, M. A. Musen
- Proceedings of 10th World Congress on Medical Informatics (MedInfo2001), London. Published in 2001
 - BMIR-2000-0857
- Representation of Temporal Indeterminacy in Clinical Databases
- M. J. O'Connor, S. W. Tu, M. A. Musen
- AMIA Annual Symposium, Los Angeles, CA. Published in 2000
 - BMIR-2000-0840
- Implementing Clinical Practice Guidelines While Taking Account of Changing Evidence: ATHENA DSS, an Easily Modifiable Decision-Support System for Managing Hypertension in Primary Care
- M. K. Goldstein, B. B. Hoffman, R. W. Coleman, S. W. Tu, A. Advani, M. J. O'Connor, R. D. Shankar, M. A. Musen
- AMIA Annual Symposium, Los Angeles, CA. Published in 2000
- BMIR-1999-0816
- A Specification for a Temporal Query System
- M. J. O'Connor, S. W. Tu, M. A. Musen
- . Published in 1999
 - BMIR-1999-0795
- Integrating a Modern Knowledge-Based System Architecture with a Legacy VA Database: The ATHENA and EON Projects at Stanford
- A. Advani, M. K. Goldstein, R. W. Coleman, M. J. O'Connor, S. W. Tu, M. A. Musen
- AMIA '99, Washington, D.C.. Published in 1999
 - BMIR-1999-0793
- Applying Temporal Joins to Clinical Databases
- M. J. O'Connor, S. W. Tu, M. A. Musen
- AMIA Annual Symposium, Washington, D.C.. Published in 1999
 - BMIR-1994-1078
- Micro-kernel support for Migration
- M. J. O'Connor, B. Tangney, V. Cahill, N. Harris
- Distributed Systems Engineering Journal, 1, 212-223. Published in 1994
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