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Publications
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Publications by Natasha F. Noy, Ph.D.
There are 62 publications that list Natasha F. Noy as an author.
- BMIR-2009-1387
- BioPortal: ontologies and integrated data resources at the click of a mouse
- N. F. Noy, N. H. Shah, T. Whetzel, B. Dai, M. V. Dorf, C. Jonquet, D. L. Rubin, M. A. Storey, C. G. Chute, M. A. Musen
- Nucleic Acids Research, 37, Web Server Issue. Published in 2009
- BMIR-2009-1386
- What Four Million Mappings Can Tell You About Two Hundred Ontologies
- A. Ghazvinian, N. F. Noy, C. Jonquet, N. H. Shah, M. A. Musen
- 8th International Semantic Web Conference (ISWC 2009), Washington, DC, Springer. In Press in 2009
- BMIR-2009-1382
- Ontology-Driven Software: What We Learned From Using Ontologies As Infrastructure For Software
- C. I. Nyulas, N. F. Noy, M. V. Dorf, M. A. Musen
- . Under Review in 2009
- BMIR-2009-1364
- Creating Mappings For Ontologies in Biomedicine: Simple Methods Work
- A. Ghazvinian, N. F. Noy, M. A. Musen
- 2009 AMIA Annual Symposium, San Francisco, CA. In Press in 2009
- BMIR-2008-1344
- Customizable Workflow Support for Collaborative Ontology Development
- A. Sebastian, T. Tudorache, N. F. Noy, M. A. Musen
- 4th International Workshop on Semantic Web Enabled Software Engineering (SWESE) at ISWC 2008, Karlsruhe, Germany. Published in 2008
- BMIR-2008-1343
- Collecting Community-Based Mappings in an Ontology
- N. F. Noy, M. A. Musen
- 7th International Semantic Web Conference (ISWC 2008), Karlsruhe, Germany, Springer. Published in 2008
- BMIR-2008-1331
- Supporting collaborative ontology development in Protege
- T. Tudorache, N. F. Noy, S. W. Tu, M. A. Musen
- Seventh International Semantic Web Conference, Karlsruhe, Germany, Springer. Published in 2008
- BMIR-2008-1311
- A Generic Ontology For Collaborative Ontology-Development Workflows
- A. Sebastian, N. F. Noy, T. Tudorache, M. A. Musen
- 16th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2008), Catania, Italy, Springer. Published in 2008
- BMIR-2008-1309
- Developing Biomedical Ontologies Collaboratively
- N. F. Noy, T. Tudorache, S. de Coronado, M. A. Musen
- AMIA 2008 Annual Symposium, Washington, DC. Published in 2008
- BMIR-2008-1308
- Representing the NCI Thesaurus in OWL DL: Modeling tools help modeling languages
- N. F. Noy, S. de Coronado, H. Solbrig, G. Fragoso, F. W. Hartel, M. A. Musen
- Applied Ontology Journal, 3, 3, 173-190. Published in 2008
 - BMIR-2008-1288
- Biomedical ontologies: a functional perspective
- D. L. Rubin, N. H. Shah, N. F. Noy
- Briefings in Bioinformatics, 9, 1, 75-90. Published in 2008
- BMIR-2007-1314
- Knowledge Zone: a public repository of peer-reviewed biomedical ontologies.
- K. S. Supekar, D. L. Rubin, N. F. Noy, M. A. Musen
- MEDINFO, Brisbane, Australia, 812-6. Published in 2007
- BMIR-2007-1284
- Searching Ontologies Based on Content: Experiments in the Biomedical Domain
- H. Alani, N. F. Noy, N. H. Shah, M. A. Musen
- The Fourth International Conference on Knowledge Capture (K-CAP 2007), Whistler, BC, Canada, ACM, 55-62. Published in 2007
- BMIR-2007-1283
- Ontology Mapping - A User Survey
- S. M. Falconer, N. F. Noy, M. A. Storey
- The Second International Workshop on Ontology Matching at ISWC 07 + ASWC 07, Busan, Korea. Published in 2007
- BMIR-2007-1262
- Using annotations from controlled vocabularies to find meaningful associations
- W. Lee, L. Raschid, P. Srinivasan, N. H. Shah, D. L. Rubin, N. F. Noy
- Lecture Notes in Bioinformatics, LNBI, 4544, 247-263. Published in 2007
- BMIR-2007-1261
- Protege: A Tool for Managing and Using Terminology in Radiology Applications
- D. L. Rubin, N. F. Noy, M. A. Musen
- Journal of Digital Imaging, J Digit Imaging. Published in 2007
- BMIR-2007-1260
- The CKC Challenge: Exploring Tools for Collaborative Knowledge
- N. F. Noy, A. Chugh, H. Alani
- . Published in 2007
- BMIR-2007-1234
- Translating the Foundational Model of Anatomy into OWL
- N. F. Noy, D. L. Rubin
- Journal of Web Semantics, 6, 2. Published in 2007
- BMIR-2006-1225
- Towards understanding the needs of cognitive support for ontology mapping
- S. M. Falconer, N. F. Noy, M. Storey
- International Workshop on Ontology Matching (OM 2006) at ISWC 2006, Athens, GA. Published in 2006
- BMIR-2006-1224
- A Framework for Ontology Evolution in Collaborative Environments
- N. F. Noy, A. Chugh, W. Liu, M. A. Musen
- 5th International Semantic Web Conference, Athens, GA. Published in 2006
- BMIR-2006-1142
- Topic-Specific Trust and Open Rating Systems: An Approach for Ontology Evaluation
- H. Lewen, K. S. Supekar, N. F. Noy, M. A. Musen
- Workshop on Evaluation of Ontologies for the Web (EON2006) at the 15th International World Wide Web Conference (WWW 2006), Edinburgh, UK. Published in 2006
- BMIR-2006-1118
- The National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge.
- D. L. Rubin, N. F. Noy, J. D. Richter, B. Smith, M. A. Storey, H. Solbrig, C. G. Chute, I. Sim, M. Ashburner, M. Westerfield, S. Misra, C. J. Mungall, S. E. Lewis, M. A. Musen
- OMICS: A Journal of Integrative Biology, 10, 2, 185-198. Published in 2006
- BMIR-2005-1113
- Representing Classes As Property Values on the Semantic Web: W3C Technical Report
- N. F. Noy
- . Published in 2005
- BMIR-2005-1112
- User ratings of ontologies: Who will rate the raters?
- N. F. Noy, R. V. Guha, M. A. Musen
- Proceedings of the AAAI 2005 Spring Symposium on Knowledge Collection from Volunteer Contributors, Stanford, CA, American Association for Artificial Intelligence (www.aaai.org). Published in 2005
- BMIR-2005-1111
- Ontology Mapping Discovery with Uncertainty
- P. Mitra, N. F. Noy, A. R. Jaiswal
- Fourth International Conference on the Semantic Web (ISWC-2005), Galway, Ireland. Published in 2005
- BMIR-2005-1110
- The Protege OWL Experience: workshop on OWL: Experiences and Directions
- H. Knublauch, M. Horridge, A. L. Rector, R. Stevens, N. Drummond, P. Lord, N. F. Noy, J. Seidenberg, H. Wang, M. A. Musen
- Fourth International Semantic Web Conference (ISWC2005), Galway, Ireland. Published in 2005
- BMIR-2005-1109
- Order from Chaos: How can ontologies and the Semantic Web help us structure the world's semi-structured information?
- N. F. Noy
- ACM Queue Magazine, 3, 8, 1-4. Published in 2005
- BMIR-2004-1131
- Making Biomedical Ontologies and Ontology Repositories Work
- N. F. Noy, D. L. Rubin, M. A. Musen
- IEEE Intelligent Systems, 19, 6, 78-81. Published in 2004
- BMIR-2004-1130
- Defining N-ary Relations on the Semantic Web: Use With Individuals (Working Draft)
- N. F. Noy, A. L. Rector
- . Published in 2004
- BMIR-2004-1129
- Semantic Integration: A Survey Of Ontology-Based Approaches
- N. F. Noy
- SIGMOD Record, Special Issue on Semantic Integration, 33, 4. Published in 2004
- BMIR-2004-1128
- Specifying Ontology Views by Traversal
- N. F. Noy, M. A. Musen
- Third International Conference on the Semantic Web (ISWC-2004), Hisroshima, Japan, Springer Berlin / Heidelberg, 713. Published in 2004
- BMIR-2004-1127
- Tracking Changes During Ontology Evolution
- N. F. Noy, S. Kunnatur, M. Klein, M. A. Musen
- Third International Conference on the Semantic Web, Hiroshima, Japan, Springer-Verlag Berlin Heidelberg, 259–273. Published in 2004
- BMIR-2004-1126
- OMEN: A Probabilistic Ontology Mapping Tool
- P. Mitra, N. F. Noy, A. R. Jaiswal
- Workshop on Meaning coordination and negotiation at the Third International Conference on the Semantic Web (ISWC-2004), Hisroshima, Japan. Published in 2004
- BMIR-2004-1125
- Using PROMPT Ontology-Comparison Tools in the EON Ontology Alignment Contest
- N. F. Noy, M. A. Musen
- Workshop on Evaluation of Ontology-based Tools (EON2004) at the Third International Conference on the Semantic Web (ISWC-2004), Hisroshima, Japan. Published in 2004
- BMIR-2004-1124
- Why Evaluate Ontology Technologies? Because It Works!
- Y. Sure, A. Gomez-Perez, W. Daelemans, M. Reinberger, N. Guarino, N. F. Noy
- IEEE Intelligent Systems, 19, 4, Trends & Controversies, pp. 74-81. Published in 2004
- BMIR-2004-1123
- Environment for Composing Constraint Axioms by Instantiating Templates
- C. J. Hou, N. F. Noy, M. A. Musen
- International Journal of Human-Computer Studies. Published in 2004
- BMIR-2004-1070
- Accessing and manipulating ontologies using web services.
- O. Dameron, N. F. Noy, H. Knublauch, M. A. Musen
- Third International Semantic Web Conference (ISWC2004), Hiroshima, Japan. Published in 2004
- BMIR-2004-1011
- The Protégé OWL Plugin: An Open Development Environment for Semantic Web Applications
- H. Knublauch, R. Fergerson, N. F. Noy, M. A. Musen
- Third International Semantic Web Conference, Hiroshima, Japan. Published in 2004
- BMIR-2003-1122
- Tools for Mapping and Merging Ontologies
- N. F. Noy
- Handbook on Ontologies, S.Staab and R. Studer, Springer-Verlag, 365-384. Published in 2003
- BMIR-2003-1121
- Tracking Complex Changes During Ontology Evolution
- N. F. Noy, M. Klein
- Second International Semantic Web Conference (ISWC-2003), Sanibel Island, Florida. Published in 2003
- BMIR-2003-0989
- Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO)
- I. Yeh, P. Karp, N. F. Noy, R. B. Altman
- Bioinformatics, 2, January 22, 241-8. Published in 2003
- BMIR-2003-0973
- The PROMPT Suite: Interactive Tools For Ontology Merging And Mapping
- N. F. Noy, M. A. Musen
- International Journal of Human-Computer Studies. Published in 2003
- BMIR-2003-0961
- Ontology Versioning as an Element of an Ontology-Evolution Framework
- N. F. Noy, M. A. Musen
- IEEE Intelligent Systems. Published in 2003
- BMIR-2003-0960
- A Component-Based Framework for Ontology Evolution
- M. Klein, N. F. Noy
- . Published in 2003
- BMIR-2002-0943
- The Evolution of Protégé: An Environment for Knowledge-Based Systems Development
- J. Gennari, R. Fergerson, W. E. Grosso, M. Crubezy, H. Eriksson, N. F. Noy, S. W. Tu, M. A. Musen
- . Published in 2002
- BMIR-2002-0936
- Evaluating Ontology-Mapping Tools: Requirements and Experience
- N. F. Noy, M. A. Musen
- . Published in 2002
- BMIR-2002-0933
- A Template-Based Approach Toward Acquisition of Logical
Sentences. Intelligent Information Processing 2002, World Computer Congress, Montreal, Canada
- C. I. Hou, N. F. Noy, M. A. Musen
- . Published in 2002
- BMIR-2002-0927
- PromptDiff: A Fixed-Point Algorithm for Comparing
Ontology Versions
- N. F. Noy, M. A. Musen
- . Published in 2002
- BMIR-2002-0926
- Ontology Evolution: Not the Same as Schema Evolution
- N. F. Noy, M. Klein
- . Published in 2002
- BMIR-2002-0925
- Pushing the Envelope: Challenges in a Frame-Based Representation of Human Anatomy
- N. F. Noy, J. L. Mejino, C. Rosse, M. A. Musen
- . Published in 2002
 - BMIR-2001-1299
- A Knowledge-Based Approach To Temporal Abstraction Of Clinical Data For Disease Surveillance
- M. A. Musen, M. J. O'Connor, D. Buckeridge, J. Graham, N. F. Noy, Y. Shahar, K. A. Henry
- NATO Human Factors in Medicine Symposium on Operational Issues in Chemical and Biological Defense, Estoril, Portugal. Published in 2001
- BMIR-2001-0889
- Anchor-PROMPT: Using Non-Local Context for Semantic Matching
- N. F. Noy, M. A. Musen
- Workshop on Ontologies and Information Sharing at the Seventeenth International Joint Conference on Artificial Intelligence (IJCAI-2001), Seattle, WA. Published in 2001
- BMIR-2001-0880
- Ontology Development 101: A Guide to Creating Your First Ontology
- N. F. Noy, D. L. McGuinness
- . Published in 2001
- BMIR-2001-0872
- Creating Semantic Web Contents with Protege-2000
- N. F. Noy, M. Sintek, S. Decker, M. Crubezy, R. Fergerson, M. A. Musen
- IEEE Intelligent Systems, 16, 2, 60-71. Published in 2001
- BMIR-2000-1120
- Ontological Foundations for Experimental Science Knowledge Bases
- N. F. Noy, C. D. Hafner
- Applied Artificial Intelligence, 14, 6. Published in 2000
- BMIR-2000-0850
- Ontology Acquisition from On-line Knowledge Sources
- Q. Li, P. Shilane, N. F. Noy, M. A. Musen
- AMIA Annual Symposium, Los Angeles, CA. Published in 2000
- BMIR-2000-0838
- Component-Based Support for Building
- M. A. Musen, R. Fergerson, W. E. Grosso, N. F. Noy, M. Crubezy, J. Gennari
- Conference on Intelligent Information Processing (IIP 2000) of the International Federation for Information Processing World Computer Congress (WCC 20, Beijing. Published in 2000
- BMIR-2000-0831
- PROMPT: Algorithm and Tool for Automated Ontology
Merging and Alignment
- N. F. Noy, M. A. Musen
- Seventeenth National Conference on Artificial Intelligence (AAAI-2000), Austin, TX. Published in 2000
- BMIR-2000-0830
- The knowledge model of Protege-2000: Combining interoperability and flexibility
- N. F. Noy, R. Fergerson, M. A. Musen
- 2th International Conference on Knowledge Engineering and Knowledge Management (EKAW'2000), Juan-les-Pins, France. Published in 2000
- BMIR-2000-0825
- Knowledge-Acquisition Interfaces for Domain Experts:
An Empirical Evaluation of Protege-2000
- N. F. Noy, W. E. Grosso, M. A. Musen
- Twelfth International Conference on Software Engineering and Knowledge Engineering (SEKE2000), Chicago, IL. Published in 2000
- BMIR-1999-0813
- SMART: Automated Support for Ontology Merging and
Alignment
- N. F. Noy, M. A. Musen
- Twelfth Banff Workshop on Knowledge Acquisition, Modeling, and Management, Banff, Alberta, Canada. Published in 1999
- BMIR-1999-0799
- An Algorithm for Merging and Aligning Ontologies:
Automation and Tool Support
- N. F. Noy, M. A. Musen
- Sixteenth National Conference on Artificial Intelligence (AAAI-99), Workshop on Ontology Management, Orlando, FL. Published in 1999
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