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Publications
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Publications by Rong Chen, Ph.D.
There are 20 publications that list Rong Chen as an author.
 - BMIR-2009-1362
- Identifying compartment-specific non-HLA targets after renal transplantation by integrating transcriptome and ‘‘antibodyome’’ measures
- L. Li, P. Wadia, M. Sarwal, N. Kambham, T. Sigdel, D. B. Miklos, R. Chen, M. Naesens, A. J. Butte
- PNAS, 106, 11, 4148-4153. Published in 2009
- BMIR-2009-1356
- Ontology-driven Indexing of Public Datasets for Translational Bioinformatics
- N. H. Shah, C. Jonquet, A. P. Chiang, A. J. Butte, R. Chen, M. A. Musen
- BMC Bioinformatics, Volume 10. Published in 2009
- BMIR-2008-1354
- Interference of globin genes with biomarker discovery for allograft rejection in peripheral blood samples
- L. Li, L. Ying, M. Naesens, W. Xiao, T. Sigdel, S. Hsieh, J. Martin, R. Chen, K. Liu, M. Mindrinos, R. W. Davis, M. Sarwal
- Physiological Genomics, 32, 190-7. Published in 2008
- BMIR-2008-1353
- GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed
- R. Chen, R. Mallelwar, A. Thosar, S. Venkatasubrahmanyam, A. J. Butte
- BMC Bioinformatics, 9, 1, 548. (doi:10.1186/1471-2105-9-548). Published in 2008
 - BMIR-2008-1346
- FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease
- R. Chen, A. A. Morgan, J. Dudley, A. M. Deshpande, L. Li, K. Kodama, A. P. Chiang, A. J. Butte
- Genome Biology, 9, 12, R170 (doi:10.1186/gb-2008-9-12-r170). Published in 2008
- BMIR-2008-1306
- Ontology-driven Indexing of Public Datasets for Translational Bioinformatics
- N. H. Shah, A. P. Chiang, A. J. Butte, R. Chen, M. A. Musen
- American Medical Informatics Association Symposium on Translational Bioinformatics, San Francisco, CA, March 10-12, 2008. Published in 2008
- BMIR-2007-1297
- Methodologies for Extracting Functional Pharmacogenomic Experiments from International Repository
- Y. Lin, A. P. Chiang, P. Yao, R. Chen, A. J. Butte, R. S. Lin
- AMIA Annual Symposium, Chicago, IL, 463-467. Published in 2007
 - BMIR-2007-1295
- AILUN: reannotating gene expression data automatically
- R. Chen, L. Li, A. J. Butte
- Nature Methods, 4, 11, 879. Published in 2007
- BMIR-2007-1270
- Integrating statistical pair potentials into protein complex prediction
- J. Mintseris, B. Pierce, K. Wiehe, R. Anderson, R. Chen, Z. Weng
- Proteins: Structure, Function and Bioinformatics, 69, 511-520. Published in 2007
 - BMIR-2006-1232
- Finding Disease-Related Genomic Experiments Within an International Repository: First Steps in Translational Bioinformatics
- A. J. Butte, R. Chen
- Annual Symposium of the American Medical Informatics Association, Washington, D.C., 106-10. Published in 2006
- BMIR-2005-1272
- Protein-Protein Docking Benchmark 2.0: an Update
- J. Mintseris, K. Wiehe, B. Pierce, R. Anderson, R. Chen, J. Janin, Z. Weng
- Proteins: Structure, Function and Bioinformatics, 60, 214 –216. Published in 2005
- BMIR-2005-1271
- ZDOCK and RDOCK Performance in CAPRI Rounds 3, 4, and 5
- K. Wiehe, B. Pierce, J. Mintseris, W. Tong, R. Anderson, R. Chen, Z. Weng
- Proteins: Structure, Function and Bioinformatics, 60, 207-213. Published in 2005
- BMIR-2003-1280
- ZDOCK Predictions for the CAPRI Challenge
- R. Chen, W. Tong, J. Mintseris, L. Li, Z. Weng
- Proteins: Structure, Function and Genetics, 52, 68-73. Published in 2003
- BMIR-2003-1279
- A Protein-Protein Docking Benchmark
- R. Chen, J. Mintseris, J. Janin, Z. Weng
- Proteins: Structure, Function and Genetics, 52, 88-91. Published in 2003
- BMIR-2003-1278
- A Novel Shape Complementarity Scoring Function For Protein-Protein Docking
- R. Chen, Z. Weng
- Proteins: Structure, Function and Genetics, 51, 397-408. Published in 2003
- BMIR-2003-1275
- ZDOCK: An Initial-stage Protein-Docking Algorithm
- R. Chen, L. Li, Z. Weng
- Proteins: Structure, Function and Genetics, 52, 80-87. Published in 2003
- BMIR-2003-1273
- RDOCK: Refinement of Rigid-body Protein Docking Predictions
- L. Li, R. Chen, Z. Weng
- Proteins: Structure, Function and Genetics, 53, 693-707. Published in 2003
- BMIR-2002-1277
- Docking Unbound Proteins Using Shape Complementarity, Desolvation, and Electorstatics
- R. Chen, Z. Weng
- Proteins: Structure, Function and Genetics, 47, 281-294. Published in 2002
- BMIR-1999-1274
- Purification and Characterization of Trichomaglin-A Novel Ribosomal-inactivating Protein with Abortificient Activity
- R. Chen, W. Y. Liu, S. W. Jin, Z. Pu, J. Wu, Y. Z. Xu, Z. X. Xia
- Biochem. Mol. Biol. Int., 47, 185-193. Published in 1999
- BMIR-1998-1276
- Theoretical Studies on Electrocompression of Electrodeposited Halid Monolayer on Au(111) Surface
- X. Q. Wang, R. Chen, Y. L. Wang, T. J. He, F. C. Liu
- J. Phys. Chem. B, 102, 7568-76. Published in 1998
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