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Novel Integration of Hopsital Electronic Medical Records and Gene Expression Measurements to Identify Genetic Markers of Maturation
Conference Proceeding
Reference:
D. P. Chen, S. C. Weber, P. S. Constantinou, T. A. Ferris, H. J. Lowe, A. J. Butte. Pacific Symposium on Biocomputing, Big Island, Hawaii, 13, 243-254. Published in 2008.
Abstract:

Traditionally, the elucidation of genes involved in maturation and aging has been studied
in a temporal fashion by examining gene expression at different time points in an
organism’s life as well as by knocking out, knocking in, and mutating genes thought to be
involved. Here, we propose an in silico method to combine clinical electronic medical
record (EMR) data and gene expression measurements in the context of disease to
identify genes that may be involved in the process of human maturation and aging. First
we show that absolute lymphocyte count may serve as a biomarker for maturation by
using statistical methods to compare trends among different clinical laboratory tests in
response to an increase in age. We then propose using the rate of decay for absolute
lymphocyte count across 12 diseases as a proxy for differences in aging. We correlate the
differing rates with gene expression across the same diseases to find maturation/aging
related genes. Among the 53 genes with strongest correlations between expression profile
and change in rate of decay, we found genes previously implicated in the process of
aging, including MGMT (DNA repair), TERF2 (telomere stability), POLD1 (DNA
replication and repair), and POLG (mtDNA replication).

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Information last updated: Mon Feb 25 2008
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Stanford School of Medicine